Itinerant Bioinformaticist

Saturday, September 17, 2016

failed to find libcuda.so on this system: Failed precondition: could not dlopen DSO: libcuda.1.dylib

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I got that error on my Mac OS X after I tried to do import tensorflow as tf . The solution is a bit hacky, but it's based on the fact t...

ld: framework not found CUDA

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On the tensorflow installations instruction page, the following commands are listed as a way to verify the CUDA installation: $ cp -r /usr...
1 comment:
Sunday, December 6, 2015

fatal error: 'cblas.h' file not found

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I once again found myself installing caffe on my Mac, and ran into that error. The solution was to install openblas via "brew install ...
Thursday, December 3, 2015

How to parse a caffe deploy.prototxt file or solver.prototxt file using python.

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1) Install google's protobuf by downloading the source from https://developers.google.com/protocol-buffers/docs/downloads (I had pr...
1 comment:
Tuesday, August 18, 2015

Yaml is really slow in vim

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Apparently this is a known issue . Here I'm documenting some specifics of the fix that weren't clear from the stackoverflow answe...

Recursive find and replace

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This was way too hard to figure out. I gave up on using sed because I was getting "invalid command code ." and "illegal byte...
Tuesday, July 14, 2015

Numpy str on integers extremely slow?

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I found a weird performance difference today: create a numpy array of integers, and then convert it to an array of strings in a list compre...
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Avanti Shrikumar
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